: The story ends on a classic cliffhanger; as the Joes celebrate their hard-won victory, Roadblock and Mainframe receive an alert of a brand-new Cobra threat, ensuring the conflict remains eternal.
: With the world's militaries paralyzed, Cobra forces defeat the G.I. Joe strike team globally. Many Joes, including leader Duke , are captured, leaving the remaining team fractured and on the run. Internal Strife and the Resistance G.I. Joe: Operation Blackout [CODEX]
: Scattered survivors like Scarlett, Roadblock, and Snake Eyes must regroup and find "The Mold," a critical relic needed to neutralize the Blackout Sphere. They eventually fight to recapture the USS Flagg and infiltrate Cobra’s headquarters. Ending and Legacy : The story ends on a classic cliffhanger;
See the initial Cobra attack on the USS Flagg and the activation of the Blackout Sphere: Many Joes, including leader Duke , are captured,
As the story progresses, players witness the internal politics of both factions: